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2013 SBR Publications

Following is a 2013 listing, which includes 129 publications.

  1. Alessi, D. S., B. Uster, C. Borca, D. Grolimund, and R. Bernier-Latmani. 2013. Beam induced oxidation of monomeric U(IV) species. J. Synchrotron Radiation 20(1):197-199. DOI:10.1107/S0909049512041763.
  2. Alexandrov, V., A. Neumann, M. M. Scherer, and K. M. Rosso. 2013. Electron Exchange and Conduction in Nontronite from First-Principles J. Phys. Chem. C 117(5):2032-2040 DOI: 10.1021/jp3110776.
  3. Alexandrov, V. and K. M. Rosso. 2013. Insights into the mechanism of Fe(II) adsorption and oxidation at Fe–clay mineral surfaces from first-principles calculations. The Journal of Physical Chemistry C. DOI: 10.1021/jp4073125.
  4. Bailey, V. L., L. A. McCue, S. J. Fansler, M. I. Boyanov, F. DeCarlo, K. M. Kemner, and A. E. Konopka. 2013. Micrometer-scale physical structure and microbial composition of soil aggregates. Soil Biology and Biochemistry 65:60-68.
  5. Bansal, R., R. A. Helmus, B. A. Stanley, J. Zhu, L. J. Liermann, S. L. Brantley, M. Tien. 2013. Survival During Long-Term Starvation: Global Proteomics Analysis of Geobacter sulfurreducens under Prolonged Electron-Acceptor Limitation. J. Proteome Res. 12:4316-26.
  6. Bargar, J. R., K. H. Williams, K. M. Campbell, P. E. Long, J. E. Stubbs, E. Suvorova, D. S. Alessi, M. Stylo, and R. Bernier-Latmani. 2013. Uranium redox transition pathways in acetate-amended sediments. Proceedings of the National Academy of Sciences 110(12):4506-4511. DOI:10.1073/pnas.1219198110.
  7. Basu, A., R. A. Sanford, C. C. Lundstrom, F. E. Loeffler, and T. M. Johnson. 2013. Uranium isotopic fractionation factors during U(VI) reduction by bacterial isolates. Geochim. Cosmochim. Acta. in review.
  8. Begg, J. D., M. Zavarin, P. Zhao, S. J. Tumey, B. A. Powell, and A.B. Kersting. 2013. Pu(V) and Pu(IV) sorption to montmorillonite. Env. Sci. Tech. 47:5146-5153. DOI:10.1021/es305257s
  9. Benzine, J. E., E. Shelobolina, M. Y. Xiong, D. W. Kennedy, J. P. McKinley, X. Lin, and E. E. Roden. 2013. Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments. Frontiers in Microbiology, In press.
  10. Beller, H. R., R. Han, U. Karaoz, H. C. Lim, and E. L. Brodie. 2013. Genomic and physiological characterization of the chromate-reducing, aquifer-derived firmicute Pelosinus sp. strain HCF1. Appl. Environ. Microb. 79:63-73.
  11. Beller, H. R., P. Zhou, T. C. Legler, A. Chakicherla, S. Kane, T. E. Letain, and P. O'Day. 2013. Genome-enabled studies of anaerobic, nitrate-dependent iron oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans. Frontiers in Microbiology 4:249. doi: 10. 3389/fmicb. 2013. 00249.
  12. Buck, E. C., A. R. Felmy, D. A. Moore, and K. R. Czerwinski. 2013. Nature of nano-sized plutonium particles in soils at the Hanford Site. Radiochimica Acta, In press.
  13. Castelle, C. J., L. A. Hug, K. C. Wrighton, B. C. Thomas, K. H. Williams, D. Wu, S. G. Tringe, S. W. Singer, J. A. Eisen, and J. F. Banfield. 2013. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Commun. Doi:10. 1038/ncomms3120.
  14. Cerrato, J. M., M. N. Ashner, D. S. Alessi, J. S. Lezama-Pacheco, R. Bernier-Latmani, J. R. Bargar, and D. E. Giammar. 2013. Relative reactivity of uraninite and non-crystalline U(IV) species. Environmental Science & Technology. 47(17):9756-9763. DOI:10.1021/es401663t.
  15. Chandler, D. P., C. Knickerbocker, L. Bryant, J. Golova, C. Wiles, K. H. Williams, A. D. Peacock, and P. E. Long. 2013. Profiling in situ microbial community structure with an amplification microarray, Appl. Environ. Microb. 79(3):799-807. DOI:10. 1128/AEM. 02664-12.
  16. Châtellier, X., M. Grybos, Abdelmoula, M., K. M. Kemner, G. G. Leppard, C. Mustin, M. M. West, and D. Paktunc. 2013. Immobilization of P by oxidation of Fe(II) ions leading to nanoparticle formation and aggregation, Applied Geochemistry 35:325-339. DOI: 10.1016/j.apgeochem.2013.04.019
  17. Chen, Jinsong, S. S. Hubbard, and K. H. Williams. 2013. Data-driven approach to identify field-scale biogeochemical transitions using geochemical and geophysical data and hidden Markov models: Development and application at a uranium-contaminated aquifer. Water Resources Research (published online Oct. 7, 2013). DOI:10.1002/wrcr.20524
  18. Chen, X., G. E. Hammond, C. Murray, M. Rockhold, V. R. Vermeul, and J. M. Zachara. 2013. Applications of ensemble-based data assimilation techniques for aquifer characterization using tracer data at Hanford 300 Area. Water Resources Research 49 doi:10.1002/2012WR013285.
  19. Chourey, K., S. Nissen, T. Vishnivetskaya, M. Shah, S. Pfiffner, R. L. Hettich, and F. E. Loeffler. 2013. Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site. Proteomics 13:2921-2930. doi: 10.1002/pmic.201300155
  20. Cismasu, A. C., C. Levard, F. M. Michel, and G. E. Brown, Jr. 2013. Properties of impurity-bearing ferrihydrite II: Insights into the surface structure and composition of pure, Al- and Si-bearing ferrihydrite from Zn(II) sorption experiments and Zn K-edge X-ray absorption spectroscopy. Geochim. Cosmochim. Acta 119:46-60. DOI: 10.1016/j.gca2013.05.040.
  21. Colombo M. J., J. Ha, J. R. Reinfelder, T. Barkay, and N. Yee. 2013. Anaerobic Oxidation of Hg(0) and Methylmercury Formation by Desulfovibrio desulfuricans ND132, Geochimica et Cosmochimica Acta 112, 166-177
  22. Dar, S. A., H. Tan, A. Peacock, P. Jaffe, L. N'Guessan, K. H. Williams, and S. M. Strycharz-Glaven. 2013. Spatial distribution of Geobacteraceae and sulfate reducing bacteria during in situ bioremediation of uranium contaminated groundwater, Remediation J. doi:10. 1002/rem. 21347.
  23. Davit, Y., C. G. Bell, H. M. Byrne, Chapman L. A. C., L. S. Kimpton, G. E. Lang, Leonard K. H. L., J. M. Oliver, N. C. Pearson, R. J. Shipley, S. L. Waters, J. P. Whiteley, B. D. Wood, and M. Quintard. 2013. Homogenization via formal multiscale asymptotics and volume averaging: How do the two techniques compare? Advances in Water Resources,
  24. Di Rienzi, Sara C., Itai Sharon, Kelly C. Wrighton, Omry Koren, Laura A. Hug, Brian C. Thomas, Julia K. Goodrich, et al. 2013. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. eLife 2.
  25. Druhan, J. L., C. I. Steefel, M. E. Conrad, and D. J. DePaolo. 2013. A large column analog experiment of stable isotope variations during reactive transport: I. A comprehensive model of sulfur cycling and δ34S fractionation. Geochimica et Cosmochimica Acta 124:366–393. Online 11 September 2013, DOI: 10.1016/j.gca.2013.08.037.
  26. Druhan, J. L., M. E. Conrad, M. Bill, H. C. Lim, K. H. Williams, D. J. DePaolo, and E. L. Brodie. 2013. A large column analog experiment of stable isotope variations during reactive transport: II. Carbon mass balance, microbial community structure and predation. Geochimica et Cosmochimica Acta Available online 11 September 2013, ISSN 0016-7037, DOI: 10.1016/j.gca.2013.08.036.
  27. Druhan, J. L., C. I. Steefel, and D. J. DePaolo. 2013. Calcium isotope fractionation in groundwater: Molecular scale processes influencing field scale behavior. Geochimica Et Cosmochimica Acta 119:93-116. DOI: 10.1016/j.gca.2013.05.022
  28. Faybishenko, B. and F. Moltz. 2013. Nonlinear rhizosphere dynamics yields synchronized oscillations of microbial populations, carbon and oxygen concentrations, induced by root exudation. Procedia Environmental Sciences 19:369-378. DOI: 10.1016/j.proenv.2013.06.042
  29. Felmy, A. R., D. A. Moore, O. Qafoku, E. C. Buck, S. D. Conradson, and E. S. Ilton. 2013. Heterogeneous reduction of 239PuO2 by aqueous Fe(II) in the presence of hematite. Radiochimica Acta, In Press.
  30. Flores Orozco, A., K. H. Williams, and A. Kemna. 2013. Time-lapse spectral induced polarization imaging of stimulated uranium bioremediation. Near Surf. Geophys. 11(5):531-544. DOI:10.3997/1873-0604.2013020.
  31. Flynn, T. M., R. A. Sanford, H. Ryu, C. M. Bethke, A. D. Levine, N. J. Ashbolt, and J. W. Santo Domingo. 2013. Functional microbial diversity explains groundwater chemistry in a pristine aquifer. BMC Microbiology 13:146. DOI:10.1186/1471-2180-13-146
  32. Fox, P. M., J. A. Davis, R. Kukkadapu, D. M. Singer, J. Bargar, and K. H. Williams. 2013. Abiotic U(VI) reduction by sorbed Fe(II) on natural sediments, Geochimica et Cosmochimica Acta doi:10. 1016/j. gca. 2013. 05. 003
  33. Gates, A. J., S. J. Marritt, J. Bradley, L. Shi, D. G. McMillan, L. J. Jeuken, D. J. Richardson, and J. N. Butt. 2013. Electrode assemblies composed of redox cascades from microbial respiratory electron transfer chains. Biochemical Society Transactions 41, 1249-1253.
  34. Gilmour, C. C., M. Podar, A. L. Bullock, A. M. Graham, S. D. Brown, A. C. Somenahally, A. Johs, R. A. Hurt Jr., K. L. Bailey and D. A. Elias. 2013. Mercury methylation by novel microorganisms from new environments. Environ. Sci. Technol. 47(20):11810-11820. DOI: 10.1021/es403075t
  35. Handley, K. M., N. G. VerBerkmoes, C. Steefel, K. H. Williams, I. Sharon, C. Miller, K. Frischkorn, K. Chourey, B. Thomas, M. Shah, P. E. Long, R. Hettich, and J. Banfield. 2013. Biostimulation induces syntrophic interactions that impact C, S, and N cycling in a sediment microbial community, ISME J. 7(4):800-816, DOI:10.1038/ismej.2012.148.
  36. Heider, Emily C., Khang Trieu, Victor M. Diaz, Karin Y. Chumbimuni-Torres, Andres D. Campiglia, Steven J. Duranceau. 2013. An indium tin oxide electrode modified with gold nanorods for use in potential-controlled surface plasmon resonance studies. Microchimica Acta 180(11-12):1013-1020. DOI:10.1007/s00604-013-1017-4
  37. Holmes, D. E., L. Giloteaux, K. H. Williams, K. C. Wrighton, M. J. Wilkins, C. A. Thompson, T. J. Roper, P. E. Long, and D. R. Lovley. 2013. Possible influence of protozoa on anaerobic groundwater bioremediation, ISME J. doi:10.1038/ismej.2013.20.
  38. Holmes, D. E., L. Giloteaux, M. Barlett, M. Chavan, J. Smith, K. H. Williams, M. J. Wilkins, P. E. Long, and D. R. Lovley. 2013. Molecular analysis of the in situ growth rate of subsurface Geobacter species, Appl. Environ. Microb. 79(5):1646-1653, DOI:10.1128/AEM.03263-12.
  39. Hsu-Kim, H., K.H. Kucharzyk, T. Zhang, M.A. Deshusses. 2013. Mechanisms Regulating Mercury Bioavailability for Methylating Microorganisms in the Aquatic Environment: A Critical Review. Environ. Sci. & Technol. 47(6):2441-2456. DOI: 10.1021/es304370g.
  40. Hu, H., H. Lin, W. Zheng, S. J. Tomanicek, A. Johs, X. Feng, D. A. Elias, L. Liang and B. Gu. 2013. Oxidation and methylation of dissolved elemental mercury by anaerobic bacteria. Nature Geoscience 6:751-754. DOI: 10.1038/ngeo1894
  41. Hug, L. A., C. J. Castelle, K. C. Wrighton, B. C. Thomas, I. Sharon, K. R. Frischkorn, K. H. Williams, S. G. Tringe, and J. F. Banfield. 2013. Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome 1:22. doi:10.1186/2049-2618-1-22.
  42. Im, I., J. Lee, and F. E. Loeffler. 2013. Interference of ferric ions with ferrous ion quantification using the ferrozine assay. J. Microbiol. Methods in press.
  43. Jin, H., C. -T. Lin, J. Shang, M. J. Wilkins, Y. Liu, W. Gong, W. Xu, T. C. Squier, and P. E. Long. 2013. Aβ-Like Peptide Displayed on Bacteriophage T7 Catalyzes Chromate and Uranyl Reduction. Journal of Environmental Protection 4:857-868. DOI: 10.4236/jep.2013.48100
  44. Kantor, Rose S., Kelly C. Wrighton, Kim M. Handley, Itai Sharon, Laura A. Hug, Cindy J. Castelle, Brian C. Thomas, and Jillian F. Banfield. 2013. Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla. mBio 4(5):e00708-13.
  45. Kaplan, D. I., M. E. Denham, S. Zhang, C. Yeager, C. Xu, K. A. Schwehr, H. P. Li, Y. F. Ho, D. Wellman, and P. H. Santschi. 2013. Biogeochemistry and Prevalence of Groundwater Radioiodine. Critical Reviews of Environmental Science and Technology in press.
  46. Kaplan, D. I., S. Zhang, K. A. Roberts, K. A. Schwehr, C. Xu, D. Creeley, Y.-F. Ho, H.-P. Li, C. M. Yeager, and P. H. Santschi. 2013. Radioiodine concentrated in a wetland. Proc. ICOBTE conference. J. Environmental Radioactivity in press.
  47. Kerisit, S. and C. Liu. 2013. Structure, kinetics, and thermodynamics of the aqueous uranyl(VI) cation. The Journal of Physical Chemistry A 117(30):6421-6432.
  48. Kersting, A.B. 2013. Plutonium transport in the environment. Invited. Inorganic Chemistry 52:3533-3546.
  49. Keyes, D. E., L. C. McInnes, C. Woodward, W. Gropp, E. Myra, M. Pernice, J. Bell, J. Brown, A. Clo, J. Connors, E. Constantinescu, D. Estep, K. Evans, C. Farhat, A. Hakim, G. Hammond, G. Hansen, J. Hill, T. Isaac, X. Jiao, K. Jordan, D. Kaushik, E. Kaxiras, A. Koniges, K. Lee, A. Lott, Q. Lu, J. Magerlein, R. Maxwell, M. McCourt, M. Mehl, R. Pawlowski, A. P. Randles, D. Reynolds, B. Riviere, U. Rude, T. Scheibe, J. Shadid, B. Sheehan, M. Shephard, A. Siegel, B. Smith, X. Tang, C. Wilson, and B. Wohlmuth. 2013. Multiphysics simulations: Challenges and Opportunities. International Journal of High Performance Computing Applications, 27(1):4-83, doi:10.1177/1094342012468181.
  50. Konopka, A., A. Plymale, D. Carvajal, X. Lin, and J. McKinley. 2013. Environmental controls on the activity of aquifer microbial communities in the 300 Area of the Hanford Site. Microbial Ecology 66, (4) 889-896.
  51. Kwon, M. J., M. I. Boyanov, D. A. Antonopoulos, J. M. Brulc, E. R. Johnston, K. Skinner, K. M. Kemner, and E. J. O’Loughlin. 2013. Effects of dissimilatory sulfate reduction on Fe(III) (hydr)oxide reduction and microbial community development. Geochimica et Cosmochimica Acta. (in press) DOI: 10.1016/j.gca.2013.09.037
  52. Landkamer, L. L., R. W. Harvey, T. D. Scheibe, and J. N. Ryan. 2013. Colloid transport in saturated porous media: Elimination of attachment efficiency in a new colloid transport model. Water Resources Research 49:2952-2965, doi:10.1002/wrcr.20195.
  53. Latta, D. E., B. Mishra, R. E. Cook, K. M. Kemner, and M. I. Boyanov. 2013. Stable U(IV) complexes form at high-affinity mineral surface sites. Accepted to Environ. Sci. Technol.
  54. Latta, D. E., C. I. Pearce, K. M. Rosso, K. M. Kemner, and M. I. Boyanov. 2013. Reaction of U(VI) with titanium-substituted magnetite: Influence of Ti on U(IV) speciation. Environmental Science & Technology 47(9):4121-4130. DOI: 10.1021/es303383n
  55. Lee, J.-H., J. M. Zachara, J. K. Fredrickson, S. M. Heald, J. P. McKinley, A. E. Plymale, C. T. Resch, and D. A. Moore. 2013. Fe(II)- and sulfide-facilitated reduction of 99Tc(VII)O4- in microbially reduced hyporheic zone sediments. Geochimica et Cosmochimica Acta ( In press.
  56. Liu, C., J. Shang, S. Kerisit, J. M. Zachara, and W. Zhu. 2013. Scale-dependent rates of uranyl surface complexation reaction in sediments. Geochimica et Cosmochimica Acta 105:326-341.
  57. Liu, J., C. I. Pearce, C. Liu, Z. Wang, L. Shi, E. Arenholz, and K. M. Rosso. 2013. Fe3–xTixO4 nanoparticles as tunable probes of microbial metal oxidation. Journal of the American Chemical Society DOI:10.1021/ja4015343.
  58. Lu, D., M. Ye, P.D. Meyer, G.P. Curtis, X. Shi, X.-F. Niu, and S.B. Yabusaki. 2013. Effect of error covariance structure on estimation of model averaging weights and predictive performance, Water Resources Research, 49(9):6029-6047. doi:10.1002/wrcr.20441
  59. Luef, B., S. C. Fakra, R. Csencsits, K. C. Wrighton, K. H. Williams, M. J. Wilkins, K. H. Downing, P. E. Long, L. R. Comolli, and J. F. Banfield. 2013. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth, ISME J. 7(2):338-350. DOI:10.1038/ismej.2012.103.
  60. Ma, R., C. Liu, J. Greskowiak, H. Prommer, J. Zachara, and C. Zheng. Influence of calcite on uranium(VI) reactive transport in the groundwater-river mixing zone. Journal of Contaminant Hydrology In press.
  61. Ma, R., C. Zheng, and C. Liu. 2013. Groundwater impacts of radioactive wastes and associated environmental modeling assessment. In, Encyclopedia of Sustainability Science and Technology. 4774-4784. Meyers, R. A. (Ed.), Springer.
  62. Maher, K., J. R. Bargar, and G. E. Brown, Jr. 2013. Environmental speciation of actinides. Inorg. Chem., 52(7):3510-3532. DOI:10.1021/ic301686d.
  63. McGuinness, L. R., N. Koribanics, K. H. Williams, P. E. Long, and L. J. Kerkhof. 2013. Active bacteria using uranium as a terminal electron acceptor at the Rifle, CO integrated field research site. ISME J. (in press)

  64. McMillan, D. G. G., S. J. Marritt, M. A. Firer-Sherwood, L. Shi, D. J. Richardson, S. D. Evans, S. J. Elliott, J. N. Butt, and L. J. Jeuken. C. 2013. Protein–protein interaction regulates the direction of catalysis and electron transfer in a redox enzyme complex. Journal of the American Chemical Society 135(28):10550-10556.
  65. Miller, C. S., K. M. Handley, K. C. Wrighton, K. Firschkorn, B. C. Thomas, and J. F. Banfield. 2013. Short-read assembly of full-length 16S amplicons to uncover bacterial diversity in subsurface sediments. PloS one 8(2):e56018. doi:10.1371/journal.pone.0056018.
  66. Moltz, F. and B. Faybishenko. 2013. Increasing evidence for chaotic dynamics in the soil-plant-atmosphere system: A motivation for future research. Procedia Environmental Sciences 19:681-690. DOI: 10.1016/j.proenv.2013.06.077
  67. Murray, C. J., J. M. Zachara, J. P. McKinley, A. Ward, Bott Y.-J., K. Draper, and D. Moore. 2013. Establishing a geochemical heterogeneity model for a contaminated vadose zone — Aquifer system. Journal of Contaminant Hydrology 153:122-140.
  68. Neumann, A., T. L. Olson, and M. M. Scherer. 2013. Spectroscopic Evidence for Fe(II)-Fe(III) Electron Transfer at Clay Mineral Edge and Basal Sites. Environ. Sci. Technol. 47(13):6969-6977. DOI: 10.1021/es304744v. Tribute Issue for Rene Scharzenbach.
  69. O'Loughlin, E. J., M. I. Boyanov, T. M. Flynn, C. A. Gorski, S. M. Hofmann, M. L. McCormick, M. M. Scherer, and K. M. Kemner. 2013. Effects of Bound Phosphate on the Bioreduction of Lepidocrocite (γ-FeOOH) and Maghemite (γ-Fe2O3) and Formation of Secondary Minerals. Environ. Sci. Technol. 47:9157-9166 DOI: 10.1021/es400627j.
  70. Orellana, R., J.J. Leavitt, L.R. Comolli, R. Csencsits, N. Janot, K.A. Flanagan, A.S. Gray, C. Leang, M. Izallalen, T. Mester, and D.R. Lovley. 2013. U(VI) reduction by a diversity of outer surface c-type cytochromes of Geobacter sulfurreducens. Appl. Environ. Microbiol. 76(12):3999-4007. DOI:10.1128/AEM.00027-10.
  71. Over, M. W., Y. Yang, X. Chen, and Y. Rubin. 2013. A strategy for improved computational efficiency of the method of anchored distributions. Water Resources Research 49(6):3257-3275.
  72. Parks, J. M., A. Johs, M. Podar, R. Bridou, R. A. Hurt Jr., S. D. Smith, S. J. Tomanicek, Y. Qian, S. D. Brown, C. C. Brandt, A. V. Palumbo, J. C. Smith, J. D. Wall, D. A. Elias, and L. Liang. 2013. The genetic basis for bacterial mercury methylation. Science 339:1332-1335. DOI: 10.1126/science.1230667
  73. Pasakarnis, T. S., M. I. Boyanov, K. M. Kemner, B. Mishra, E. J. O'Loughlin, G. Parkin, and M. M. Scherer. 2013. Influence of chloride and Fe(II) content on the reduction of Hg(II) by magnetite, Environmental Science & Technology 47(13):6987-6994. DOI: 10.1021/es304761u
  74. Pearce, C. I., J. Liu, D. R. Baer, O. Qafoku, S. Heald, E. Arenholz, A. E. Grosz, J. P. McKinley, C. T. Resch, M. E. Bowden, M. H. Engelhard, and K. M. Rosso. 2013. Characterization of natural titanomagnetites (Fe3-xTixO4) for studying heterogeneous electron transfer to Tc(VII) in the Hanford subsurface. Geochimica et Cosmochimica Acta, In press.
  75. Poulain, A.J., and T. Barkay. 2013. Cracking the mercury methylation code. Science 339:1280-1281. doi: 10.1126/science.1235591
  76. Redden, G., D. Fox, C. Zhang, Y. Fujita, L. Guo, and H. Huang. 2013. CaCO3 Precipitation, Transport and Sensing in Porous Media with In Situ Generation of Reactants. Environmental Science & Technology 48(1):542-549.
  77. Renslow, R. S., J. T. Babauta, A. C. Dohnalkova, M. I. Boyanov, K. M. Kemner, P. D. Majors, J. K. Fredrickson, and H. Beyenal. 2013. Metabolic spatial variability in electrode-respiring Geobacter sulfurreducens biofilms, Energy & Environmental Science 6(6):1827-1836. DOI: 10.1039/c3ee40203g
  78. Renslow, R., J. Babauta, A. Kuprat, J. Schenk, C. Ivory, J. Fredrickson, and H. Beyenal. 2013. Modeling biofilms with dual extracellular electron transfer mechanisms. Physical Chemistry Chemical Physics, DOI:10.1039/C3CP53759E.
  79. Riccardi, D., H.-B. Guo, J. M. Parks, B. Gu, A. O. Summers, S.M. Miller, L. Liang, and J.C. Smith. 2013. Why mercury prefers soft ligands. J. Phys. Chem. Lett. 4:2317-2322. DOI: 10.1021/jz401075b
  80. Riccardi, D., H.-B. Guo, J. M. Parks, B. Gu, L. Liang, and J. C. Smith. 2013. Cluster-continuum calculations of hydration free energies of anions and group 12 divalent cations. J. Chem. Theory Comput. 9:555-569. DOI: 10.1021/ct300296k
  81. Richmond, M. C., W. A. Perkins, T. D. Scheibe, A. Lambert, and B. D. Wood. 2013. Flow and axial dispersion in a sinusoidal-walled tube: Effects of inertial and unsteady flows. Advances in Water Resources,
  82. Roubinet, D. and D. M. Tartakovsky. 2013. Hybrid models for heterogeneous geochemical reactions in fractured porous media. in preparation. Water Resour. Res..
  83. Roubinet, D., J.-R. de Dreuzy, and D. M. Tartakovsky. 2013. Particle-tracking simulations of anomalous transport in hierarchically fractured rocks. Computers & Geosciences 50:52-58, doi:10.1016/j.cageo.2012.07.032.
  84. Rui, X., M. J. Kwon, E. J. O'Loughlin, Dunham-Cheatham, S., J. B. Fein, B. Bunker, K. M. Kemner, and M. I. Boyanov. 2013. Bioreduction of hydrogen uranyl phosphate: Mechanisms and U(IV) products, Environmental Science & Technology 47(11):5668-5678. DOI: 10.1021/es305258p
  85. Ruis Martinez, A., D. Roubinet, and D. M. Tartakovsky. 2013. Analytical models of heat conduction in fractured rocks. J. Geophys. Res. Solid Earth submitted.
  86. Salome, K. R., S. J. Green, M. J. Beazley, S. M. Webb, J. E. Kostka, and M. Taillefert. 2013. The role of anaerobic respiration in the immobilization of uranium through biomineralization of phosphate minerals. Geochimica et Cosmochimica Acta. 106, 344-363. doi:10.1016/j.gca.2012.12.037
  87. Scheibe, T. D., E. M. Murphy, X. Chen, A. K. Rice, K. C. Carroll, B. J. Palmer, A. M. Tartakovsky, I. Battiato, and B. D. Wood. 2013. An analysis platform for multiscale hydrogeologic modeling with emphasis on hybrid multiscale methods. in revision. Ground Water.
  88. Scheibe, T. D., Z. Hou, B. J. Palmer, and A. M. Tartakovsky. 2013. Pore-scale simulation of intragranular diffusion: Effects of incomplete mixing on macroscopic manifestations. Water Resources Research 49(7):4277-4294.
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