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Subsurface Biogeochemical Research Program

2013 SBR Publications

Following is a 2013 listing, which includes 130 publications.

  1. Alessi, D. S., B. Uster, C. Borca, D. Grolimund, and R. Bernier-Latmani. 2013. Beam induced oxidation of monomeric U(IV) species. J. Synchrotron Radiation 20(1):197-199. DOI:10.1107/S0909049512041763.
  2. Alexandrov, V., A. Neumann, M. M. Scherer, and K. M. Rosso. 2013. Electron Exchange and Conduction in Nontronite from First-Principles J. Phys. Chem. C 117(5):2032-2040 DOI: 10.1021/jp3110776.
  3. Alexandrov, V. and K. M. Rosso. 2013. Insights into the mechanism of Fe(II) adsorption and oxidation at Fe–clay mineral surfaces from first-principles calculations. The Journal of Physical Chemistry C 117:22880-22886. DOI: 10.1021/jp4073125.
  4. Bailey, V. L., L. A. McCue, S. J. Fansler, M. I. Boyanov, F. DeCarlo, K. M. Kemner, and A. E. Konopka. 2013. Micrometer-scale physical structure and microbial composition of soil aggregates. Soil Biology and Biochemistry 65:60-68.
  5. Bansal, R., R. A. Helmus, B. A. Stanley, J. Zhu, L. J. Liermann, S. L. Brantley, M. Tien. 2013. Survival During Long-Term Starvation: Global Proteomics Analysis of Geobacter sulfurreducens under Prolonged Electron-Acceptor Limitation. J. Proteome Res. 12:4316-26.
  6. Bargar, J. R., K. H. Williams, K. M. Campbell, P. E. Long, J. E. Stubbs, E. Suvorova, D. S. Alessi, M. Stylo, and R. Bernier-Latmani. 2013. Uranium redox transition pathways in acetate-amended sediments. Proceedings of the National Academy of Sciences 110(12):4506-4511. DOI:10.1073/pnas.1219198110.
  7. Begg, J. D., M. Zavarin, P. Zhao, S. J. Tumey, B. A. Powell, and A.B. Kersting. 2013. Pu(V) and Pu(IV) sorption to montmorillonite. Env. Sci. Tech. 47:5146-5153. DOI:10.1021/es305257s
  8. Beller, H. R., R. Han, U. Karaoz, H. C. Lim, and E. L. Brodie. 2013. Genomic and physiological characterization of the chromate-reducing, aquifer-derived firmicute Pelosinus sp. strain HCF1. Appl. Environ. Microb. 79:63-73.
  9. Beller, H. R., P. Zhou, T. C. Legler, A. Chakicherla, S. Kane, T. E. Letain, and P. O'Day. 2013. Genome-enabled studies of anaerobic, nitrate-dependent iron oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans. Frontiers in Microbiology 4:249. doi: 10. 3389/fmicb. 2013. 00249.
  10. Benzine, J. E., E. Shelobolina, M. Y. Xiong, D. W. Kennedy, J. P. McKinley, X. Lin, and E. E. Roden. 2013. Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments. Frontiers in Microbiology 4:388; doi: 10.3389/fmicb.2013.00388
  11. Bi, Y., S. P. Hyun, R. Kukkadapu, and K. F. Hayes. 2013. Oxidative Dissolution of UO2 in a Simulated Groundwater Containing Synthetic Nanocrystalline Mackinawite. Geochimica et Cosmochimica Acta 102:175-190; 10.1016/j.gca.2012.10.032
  12. Brown, S.D., R. A. Hurt, C. C. Gilmour, and D. A. Elias. 2013. Draft genome sequences for three mercury methylating sulfate-reducing bacteria. Genome Announcements 1(4):e00618-13. doi:10.1128/genomeA.00618-13.
  13. Castelle, C. J., L. A. Hug, K. C. Wrighton, B. C. Thomas, K. H. Williams, D. Wu, S. G. Tringe, S. W. Singer, J. A. Eisen, and J. F. Banfield. 2013. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Commun. Doi:10. 1038/ncomms3120.
  14. Cerrato, J. M., M. N. Ashner, D. S. Alessi, J. S. Lezama-Pacheco, R. Bernier-Latmani, J. R. Bargar, and D. E. Giammar. 2013. Relative reactivity of uraninite and non-crystalline U(IV) species. Environmental Science & Technology. 47(17):9756-9763. DOI:10.1021/es401663t.
  15. Chandler, D. P., C. Knickerbocker, L. Bryant, J. Golova, C. Wiles, K. H. Williams, A. D. Peacock, and P. E. Long. 2013. Profiling in situ microbial community structure with an amplification microarray, Appl. Environ. Microb. 79(3):799-807. DOI:10. 1128/AEM. 02664-12.
  16. Chang, H.-S., C. Xu, K. A. Schwehr, S. Zhang, D. I. Kaplan, J. C. Seaman, C. Yeager, and P. H. Santschi. 2013. Model of Radioiodine Speciation and Partitioning in Organic-rich and Organic-poor Soils from the Savannah River Site. Journal of Environmental Chemical Engineering 2:1321-1330.
  17. Châtellier, X., M. Grybos, Abdelmoula, M., K. M. Kemner, G. G. Leppard, C. Mustin, M. M. West, and D. Paktunc. 2013. Immobilization of P by oxidation of Fe(II) ions leading to nanoparticle formation and aggregation, Applied Geochemistry 35:325-339. DOI: 10.1016/j.apgeochem.2013.04.019
  18. Chen, Jinsong, S. S. Hubbard, and K. H. Williams. 2013. Data-driven approach to identify field-scale biogeochemical transitions using geochemical and geophysical data and hidden Markov models: Development and application at a uranium-contaminated aquifer. Water Resources Research 49(10):6412-6424, DOI:10.1002/wrcr.20524
  19. Chen, X., G. E. Hammond, C. Murray, M. Rockhold, V. R. Vermeul, and J. M. Zachara. 2013. Applications of ensemble-based data assimilation techniques for aquifer characterization using tracer data at Hanford 300 Area. Water Resources Research 49 doi:10.1002/2012WR013285.
  20. Chourey, K., S. Nissen, T. Vishnivetskaya, M. Shah, S. Pfiffner, R. L. Hettich, and F. E. Loeffler. 2013. Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site. Proteomics 13:2921-2930. doi: 10.1002/pmic.201300155
  21. Cismasu, A. C., C. Levard, F. M. Michel, and G. E. Brown, Jr. 2013. Properties of impurity-bearing ferrihydrite II: Insights into the surface structure and composition of pure, Al- and Si-bearing ferrihydrite from Zn(II) sorption experiments and Zn K-edge X-ray absorption spectroscopy. Geochim. Cosmochim. Acta 119:46-60. DOI: 10.1016/j.gca2013.05.040.
  22. Colombo M. J., J. Ha, J. R. Reinfelder, T. Barkay, and N. Yee. 2013. Anaerobic Oxidation of Hg(0) and Methylmercury Formation by Desulfovibrio desulfuricans ND132, Geochimica et Cosmochimica Acta 112:166-177
  23. Dar, S. A., H. Tan, A. Peacock, P. Jaffe, L. N'Guessan, K. H. Williams, and S. M. Strycharz-Glaven. 2013. Spatial distribution of Geobacteraceae and sulfate reducing bacteria during in situ bioremediation of uranium contaminated groundwater. Remediation J. 23(2):31-49,doi:10. 1002/rem. 21347.
  24. Davit, Y., C. G. Bell, H. M. Byrne, Chapman L. A. C., L. S. Kimpton, G. E. Lang, Leonard K. H. L., J. M. Oliver, N. C. Pearson, R. J. Shipley, S. L. Waters, J. P. Whiteley, B. D. Wood, and M. Quintard. 2013. Homogenization via formal multiscale asymptotics and volume averaging: How do the two techniques compare? Advances in Water Resources,
  25. Deng, H., Z. Dai, A. V. Wolfsberg, M. Ye, P. H. Stauffer, Z. Lu, and E. Kwicklis. 2013. Upscaling Retardation Factor in Hierarchical Porous Media with Multimodal Reactive Mineral Facies. Chemosphere 91(3):248-257; doi:10.1016/j.chemosphere.2012.10.105.
  26. Di Rienzi, Sara C., Itai Sharon, Kelly C. Wrighton, Omry Koren, Laura A. Hug, Brian C. Thomas, Julia K. Goodrich, et al. 2013. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. eLife 2.
  27. Dimkpa, C.O., D. E. Latta, J. E. McLean, D. W. Britt, M. I. Boyanov, and A. J. Anderson. 2013. Fate of CuO and ZnO nano and micro particles in the plant environment. Environmental Science and Technology 47:4734−4742.
  28. Druhan, J. L., C. I. Steefel, M. E. Conrad, and D. J. DePaolo. 2013. A large column analog experiment of stable isotope variations during reactive transport: I. A comprehensive model of sulfur cycling and δ34S fractionation. Geochimica et Cosmochimica Acta 124:366–393. Online 11 September 2013, DOI: 10.1016/j.gca.2013.08.037.
  29. Druhan, J. L., M. E. Conrad, M. Bill, H. C. Lim, K. H. Williams, D. J. DePaolo, and E. L. Brodie. 2013. A large column analog experiment of stable isotope variations during reactive transport: II. Carbon mass balance, microbial community structure and predation. Geochimica et Cosmochimica Acta Available online 11 September 2013, ISSN 0016-7037, DOI: 10.1016/j.gca.2013.08.036.
  30. Druhan, J. L., C. I. Steefel, and D. J. DePaolo. 2013. Calcium isotope fractionation in groundwater: Molecular scale processes influencing field scale behavior. Geochimica Et Cosmochimica Acta 119:93-116. DOI: 10.1016/j.gca.2013.05.022
  31. Faybishenko, B. and F. Moltz. 2013. Nonlinear rhizosphere dynamics yields synchronized oscillations of microbial populations, carbon and oxygen concentrations, induced by root exudation. Procedia Environmental Sciences 19:369-378. DOI: 10.1016/j.proenv.2013.06.042
  32. Felmy, A. R., D. A. Moore, O. Qafoku, E. C. Buck, S. D. Conradson, and E. S. Ilton. 2013. Heterogeneous reduction of 239PuO2 by aqueous Fe(II) in the presence of hematite. Radiochimica Acta 101:701-710; DOI 10.1524/ract.2013.2091
  33. Flores Orozco, A., K. H. Williams, and A. Kemna. 2013. Time-lapse spectral induced polarization imaging of stimulated uranium bioremediation. Near Surf. Geophys. 11(5):531-544. DOI:10.3997/1873-0604.2013020.
  34. Flynn, T. M., R. A. Sanford, H. Ryu, C. M. Bethke, A. D. Levine, N. J. Ashbolt, and J. W. Santo Domingo. 2013. Functional microbial diversity explains groundwater chemistry in a pristine aquifer. BMC Microbiology 13:146. DOI:10.1186/1471-2180-13-146
  35. Fox, P. M., J. A. Davis, R. Kukkadapu, D. M. Singer, J. Bargar, and K. H. Williams. 2013. Abiotic U(VI) reduction by sorbed Fe(II) on natural sediments. Geochimica et Cosmochimica Acta doi:10.1016/j.gca.2013.05.003
  36. Gates, A. J., S. J. Marritt, J. Bradley, L. Shi, D. G. McMillan, L. J. Jeuken, D. J. Richardson, and J. N. Butt. 2013. Electrode assemblies composed of redox cascades from microbial respiratory electron transfer chains. Biochemical Society Transactions 41:1249-1253.
  37. Gilmour, C. C., M. Podar, A. L. Bullock, A. M. Graham, S. D. Brown, A. C. Somenahally, A. Johs, R. A. Hurt Jr., K. L. Bailey and D. A. Elias. 2013. Mercury methylation by novel microorganisms from new environments. Environ. Sci. Technol. 47(20):11810-11820. DOI: 10.1021/es403075t
  38. Handley, K. M., N. G. VerBerkmoes, C. Steefel, K. H. Williams, I. Sharon, C. Miller, K. Frischkorn, K. Chourey, B. Thomas, M. Shah, P. E. Long, R. Hettich, and J. Banfield. 2013. Biostimulation induces syntrophic interactions that impact C, S, and N cycling in a sediment microbial community. ISME J. 7(4):800-816, DOI:10.1038/ismej.2012.148.
  39. Heider, Emily C., Khang Trieu, Victor M. Diaz, Karin Y. Chumbimuni-Torres, Andres D. Campiglia, Steven J. Duranceau. 2013. An indium tin oxide electrode modified with gold nanorods for use in potential-controlled surface plasmon resonance studies. Microchimica Acta 180(11-12):1013-1020. DOI:10.1007/s00604-013-1017-4
  40. Holmes, D. E., L. Giloteaux, K. H. Williams, K. C. Wrighton, M. J. Wilkins, C. A. Thompson, T. J. Roper, P. E. Long, and D. R. Lovley. 2013. Possible influence of protozoa on anaerobic groundwater bioremediation, ISME J. doi:10.1038/ismej.2013.20.
  41. Holmes, D. E., L. Giloteaux, M. Barlett, M. Chavan, J. Smith, K. H. Williams, M. J. Wilkins, P. E. Long, and D. R. Lovley. 2013. Molecular analysis of the in situ growth rate of subsurface Geobacter species, Appl. Environ. Microb. 79(5):1646-1653, DOI:10.1128/AEM.03263-12.
  42. Hsu-Kim, H., K.H. Kucharzyk, T. Zhang, M.A. Deshusses. 2013. Mechanisms Regulating Mercury Bioavailability for Methylating Microorganisms in the Aquatic Environment: A Critical Review. Environ. Sci. & Technol. 47(6):2441-2456. DOI: 10.1021/es304370g.
  43. Hu, H., H. Lin, W. Zheng, S. J. Tomanicek, A. Johs, X. Feng, D. A. Elias, L. Liang and B. Gu. 2013. Oxidation and methylation of dissolved elemental mercury by anaerobic bacteria. Nature Geoscience 6:751-754. DOI: 10.1038/ngeo1894
  44. Hu, H., H. Lin, W. Zheng, B. Rao, X. Feng, L. Liang, D. A. Elias, and B. Gu. 2013. Mercury reduction and cell-surface adsorption by Geobacter sulfurreducens PCA. Environ. Sci. Technol. 47:10922-10930; 10.1021/es400527m.
  45. Hug, L. A., C. J. Castelle, K. C. Wrighton, B. C. Thomas, I. Sharon, K. R. Frischkorn, K. H. Williams, S. G. Tringe, and J. F. Banfield. 2013. Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome 1:22. doi:10.1186/2049-2618-1-22.
  46. Im, I., J. Lee, and F. E. Loeffler. 2013. Interference of ferric ions with ferrous ion quantification using the ferrozine assay. J. Microbiol. Methods 95(3): 366-367; doi:10.1016/j.mimet.2013.10.005
  47. Jin, H., C. -T. Lin, J. Shang, M. J. Wilkins, Y. Liu, W. Gong, W. Xu, T. C. Squier, and P. E. Long. 2013. Aβ-Like Peptide Displayed on Bacteriophage T7 Catalyzes Chromate and Uranyl Reduction. Journal of Environmental Protection 4:857-868. DOI: 10.4236/jep.2013.48100
  48. Kantor, Rose S., Kelly C. Wrighton, Kim M. Handley, Itai Sharon, Laura A. Hug, Cindy J. Castelle, Brian C. Thomas, and Jillian F. Banfield. 2013. Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla. mBio 4(5):e00708-13.
  49. Kerisit, S. and C. Liu. 2013. Structure, kinetics, and thermodynamics of the aqueous uranyl(VI) cation. The Journal of Physical Chemistry A 117(30):6421-6432.
  50. Kersting, A.B. 2013. Plutonium transport in the environment. Invited. Inorganic Chemistry 52:3533-3546.
  51. Keyes, D. E., L. C. McInnes, C. Woodward, W. Gropp, E. Myra, M. Pernice, J. Bell, J. Brown, A. Clo, J. Connors, E. Constantinescu, D. Estep, K. Evans, C. Farhat, A. Hakim, G. Hammond, G. Hansen, J. Hill, T. Isaac, X. Jiao, K. Jordan, D. Kaushik, E. Kaxiras, A. Koniges, K. Lee, A. Lott, Q. Lu, J. Magerlein, R. Maxwell, M. McCourt, M. Mehl, R. Pawlowski, A. P. Randles, D. Reynolds, B. Riviere, U. Rude, T. Scheibe, J. Shadid, B. Sheehan, M. Shephard, A. Siegel, B. Smith, X. Tang, C. Wilson, and B. Wohlmuth. 2013. Multiphysics simulations: Challenges and Opportunities. International Journal of High Performance Computing Applications, 27(1):4-83, doi:10.1177/1094342012468181.
  52. Kocman, D., S. C. Brooks, C. L. Miller, and X. L. Yin. 2013. Evaluation of centrifugal ultra-filters for size fractionation of total mercury and methylmercury in freshwaters. Environ. Chern. 10(4):323-332 10.1071/EN12199
  53. Konopka, A., A. Plymale, D. Carvajal, X. Lin, and J. McKinley. 2013. Environmental controls on the activity of aquifer microbial communities in the 300 Area of the Hanford Site. Microbial Ecology 66 (4):889-896.
  54. Landkamer, L. L., R. W. Harvey, T. D. Scheibe, and J. N. Ryan. 2013. Colloid transport in saturated porous media: Elimination of attachment efficiency in a new colloid transport model. Water Resources Research 49:2952-2965, doi:10.1002/wrcr.20195.
  55. Latta, D. E., C. I. Pearce, K. M. Rosso, K. M. Kemner, and M. I. Boyanov. 2013. Reaction of U(VI) with titanium-substituted magnetite: Influence of Ti on U(IV) speciation. Environmental Science & Technology 47(9):4121-4130. DOI: 10.1021/es303383n
  56. Liu, C., J. Shang, S. Kerisit, J. M. Zachara, and W. Zhu. 2013. Scale-dependent rates of uranyl surface complexation reaction in sediments. Geochimica et Cosmochimica Acta 105:326-341.
  57. Liu, J., C. I. Pearce, C. Liu, Z. Wang, L. Shi, E. Arenholz, and K. M. Rosso. 2013. Fe3–xTixO4 nanoparticles as tunable probes of microbial metal oxidation. Journal of the American Chemical Society DOI:10.1021/ja4015343.
  58. Lu, D., M. Ye, P.D. Meyer, G.P. Curtis, X. Shi, X.-F. Niu, and S.B. Yabusaki. 2013. Effect of error covariance structure on estimation of model averaging weights and predictive performance. Water Resources Research. 49(9):6029-6047. doi:10.1002/wrcr.20441
  59. Luef, B., S. C. Fakra, R. Csencsits, K. C. Wrighton, K. H. Williams, M. J. Wilkins, K. H. Downing, P. E. Long, L. R. Comolli, and J. F. Banfield. 2013. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth, ISME J. 7(2):338-350. DOI:10.1038/ismej.2012.103.
  60. Ma, R., C. Zheng, and C. Liu. 2013. Groundwater impacts of radioactive wastes and associated environmental modeling assessment. In, Encyclopedia of Sustainability Science and Technology. 4774-4784. Meyers, R. A. (Ed.), Springer.
  61. Maher, K., J. R. Bargar, and G. E. Brown, Jr. 2013. Environmental speciation of actinides. Inorg. Chem.. 52(7):3510-3532. DOI:10.1021/ic301686d.
  62. Mays, D.C. 2013. Clogging in managed aquifer recharge: Flow, geochemistry, and clay colloids, in Martin, R., ed., Clogging Issues Associated with Managed Aquifer Recharge Methods, International Association of Hydrogeologists (IAH) Commission on Managing Aquifer Recharge, Australia, 14-24. 
  63. McMillan, D. G. G., S. J. Marritt, M. A. Firer-Sherwood, L. Shi, D. J. Richardson, S. D. Evans, S. J. Elliott, J. N. Butt, and L. J. Jeuken. C. 2013. Protein–protein interaction regulates the direction of catalysis and electron transfer in a redox enzyme complex. Journal of the American Chemical Society 135(28):10550-10556.
  64. Miller, C. S., K. M. Handley, K. C. Wrighton, K. Firschkorn, B. C. Thomas, and J. F. Banfield. 2013. Short-read assembly of full-length 16S amplicons to uncover bacterial diversity in subsurface sediments. PloS one 8(2):e56018. doi:10.1371/journal.pone.0056018.
  65. Moltz, F. and B. Faybishenko. 2013. Increasing evidence for chaotic dynamics in the soil-plant-atmosphere system: A motivation for future research. Procedia Environmental Sciences 19:681-690. DOI: 10.1016/j.proenv.2013.06.077
  66. Murray, C. J., J. M. Zachara, J. P. McKinley, A. Ward, Bott Y.-J., K. Draper, and D. Moore. 2013. Establishing a geochemical heterogeneity model for a contaminated vadose zone — Aquifer system. Journal of Contaminant Hydrology 153:122-140.
  67. Nakshatrala, K., M. K. Mudunuru, and A. J. Valocchi. 2013. A numerical framework for diffusion-controlled bimolecular-reactive systems to enforce maximum principles and the non-negative constraint. Journal of Computational  Physics. 253: 278-307; 10.1016/
  68. Neumann, A., T. L. Olson, and M. M. Scherer. 2013. Spectroscopic Evidence for Fe(II)-Fe(III) Electron Transfer at Clay Mineral Edge and Basal Sites. Environ. Sci. Technol. 47(13):6969-6977. DOI: 10.1021/es304744v. Tribute Issue for Rene Scharzenbach.
  69. Nicora, C. D., B. J. Anderson, S. J. Callister, A. D. Norbeck, S. O. Purvine, J. K. Jansson, O. U. Mason, M. M. David, D. Jurelevicius, R. D. Smith, and M. S. Lipton. 2013. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics, Special Issue: Environmental Microbial Proteomics 13(18-19):2776–2785, 10.1002/pmic.201300003
  70. O'Loughlin, E. J., M. I. Boyanov, T. M. Flynn, C. A. Gorski, S. M. Hofmann, M. L. McCormick, M. M. Scherer, and K. M. Kemner. 2013. Effects of Bound Phosphate on the Bioreduction of Lepidocrocite (γ-FeOOH) and Maghemite (γ-Fe2O3) and Formation of Secondary Minerals. Environ. Sci. Technol. 47:9157-9166 DOI: 10.1021/es400627j.
  71. Orellana, R., J.J. Leavitt, L.R. Comolli, R. Csencsits, N. Janot, K.A. Flanagan, A.S. Gray, C. Leang, M. Izallalen, T. Mester, and D.R. Lovley. 2013. U(VI) reduction by a diversity of outer surface c-type cytochromes of Geobacter sulfurreducens. Appl. Environ. Microbiol. 76(12):3999-4007. DOI:10.1128/AEM.00027-10.
  72. Over, M. W., Y. Yang, X. Chen, and Y. Rubin. 2013. A strategy for improved computational efficiency of the method of anchored distributions. Water Resources Research 49(6):3257-3275.
  73. Parks, J. M., A. Johs, M. Podar, R. Bridou, R. A. Hurt Jr., S. D. Smith, S. J. Tomanicek, Y. Qian, S. D. Brown, C. C. Brandt, A. V. Palumbo, J. C. Smith, J. D. Wall, D. A. Elias, and L. Liang. 2013. The genetic basis for bacterial mercury methylation. Science 339:1332-1335. DOI: 10.1126/science.1230667
  74. Pasakarnis, T. S., M. I. Boyanov, K. M. Kemner, B. Mishra, E. J. O'Loughlin, G. Parkin, and M. M. Scherer. 2013. Influence of chloride and Fe(II) content on the reduction of Hg(II) by magnetite, Environmental Science & Technology 47(13):6987-6994. DOI: 10.1021/es304761u
  75. Poulain, A.J., and T. Barkay. 2013. Cracking the mercury methylation code. Science 339:1280-1281. doi: 10.1126/science.1235591
  76. Probst A. J., H. Y. N. Holman, T. Z. DeSantis, G. L. Andersen, H. A. Bechtel, M. Sonnleitner, K. Venkateswaran, and C. Moissl-Eichinger. 2013. Trackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm. ISME Journal 73:635, 10.1038/ismej.2012.133.
  77. Redden, G., D. Fox, C. Zhang, Y. Fujita, L. Guo, and H. Huang. 2013. CaCO3 Precipitation, Transport and Sensing in Porous Media with In Situ Generation of Reactants. Environmental Science & Technology 48(1):542-549.
  78. Renslow, R. S., J. T. Babauta, A. C. Dohnalkova, M. I. Boyanov, K. M. Kemner, P. D. Majors, J. K. Fredrickson, and H. Beyenal. 2013. Metabolic spatial variability in electrode-respiring Geobacter sulfurreducens biofilms, Energy & Environmental Science 6(6):1827-1836. DOI: 10.1039/c3ee40203g
  79. Renslow, R., J. Babauta, A. Kuprat, J. Schenk, C. Ivory, J. Fredrickson, and H. Beyenal. 2013. Modeling biofilms with dual extracellular electron transfer mechanisms. Physical Chemistry Chemical Physics, DOI:10.1039/C3CP53759E.
  80. Revil, A., W. Yuxin, M. Karaoulis, S. S. Hubbard, D. B. Watson, and J. D. Eppihimer. 2013. Geochemical and geophysical responses during the infiltration of fresh water into the contaminated saprolite of the Oak Ridge Integrated Field Research Challenge site, Tennessee. Water Resources Research 49(8):4952-4970; DOI: 10.1002/wrcr.20380.
  81. Riccardi, D., H.-B. Guo, J. M. Parks, B. Gu, A. O. Summers, S.M. Miller, L. Liang, and J.C. Smith. 2013. Why mercury prefers soft ligands. J. Phys. Chem. Lett. 4:2317-2322. DOI: 10.1021/jz401075b
  82. Riccardi, D., H.-B. Guo, J. M. Parks, B. Gu, L. Liang, and J. C. Smith. 2013. Cluster-continuum calculations of hydration free energies of anions and group 12 divalent cations. J. Chem. Theory Comput. 9:555-569. DOI: 10.1021/ct300296k
  83. Richmond, M. C., W. A. Perkins, T. D. Scheibe, A. Lambert, and B. D. Wood. 2013. Flow and axial dispersion in a sinusoidal-walled tube: Effects of inertial and unsteady flows. Advances in Water Resources,
  84. Roubinet, D. and D. M. Tartakovsky. 2013. Hybrid models for heterogeneous geochemical reactions in fractured porous media. Water Resour. Res..49(12):7945-7956; DOI: 10.1002/2013WR013999
  85. Roubinet, D., J.-R. de Dreuzy, and D. M. Tartakovsky. 2013. Particle-tracking simulations of anomalous transport in hierarchically fractured rocks. Computers & Geosciences 50:52-58, doi:10.1016/j.cageo.2012.07.032.
  86. Rui, X., M. J. Kwon, E. J. O'Loughlin, Dunham-Cheatham, S., J. B. Fein, B. Bunker, K. M. Kemner, and M. I. Boyanov. 2013. Bioreduction of hydrogen uranyl phosphate: Mechanisms and U(IV) products, Environmental Science & Technology 47(11):5668-5678. DOI: 10.1021/es305258p
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